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BMCBI
2006
102views more  BMCBI 2006»
14 years 9 months ago
SNA - a toolbox for the stoichiometric analysis of metabolic networks
Background: Despite recent algorithmic and conceptual progress, the stoichiometric network analysis of large metabolic models remains a computationally challenging problem. Result...
Robert Urbanczik
SP
2008
IEEE
122views Security Privacy» more  SP 2008»
14 years 9 months ago
Large-scale phylogenetic analysis on current HPC architectures
Abstract. Phylogenetic inference is considered a grand challenge in Bioinformatics due to its immense computational requirements. The increasing popularity and availability of larg...
Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew...
BMCBI
2011
14 years 1 months ago
PeakRanger: A cloud-enabled peak caller for ChIP-seq data
Background: Chromatin immunoprecipitation (ChIP), coupled with massively parallel short-read sequencing (seq) is used to probe chromatin dynamics. Although there are many algorith...
Xin Feng, Robert Grossman, Lincoln Stein
PPOPP
2011
ACM
14 years 16 days ago
GRace: a low-overhead mechanism for detecting data races in GPU programs
In recent years, GPUs have emerged as an extremely cost-effective means for achieving high performance. Many application developers, including those with no prior parallel program...
Mai Zheng, Vignesh T. Ravi, Feng Qin, Gagan Agrawa...
CF
2011
ACM
13 years 9 months ago
SIFT: a low-overhead dynamic information flow tracking architecture for SMT processors
Dynamic Information Flow Tracking (DIFT) is a powerful technique that can protect unmodified binaries from a broad range of vulnerabilities such as buffer overflow and code inj...
Meltem Ozsoy, Dmitry Ponomarev, Nael B. Abu-Ghazal...