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BMCBI
2008
127views more  BMCBI 2008»
15 years 1 months ago
MetaMine - A tool to detect and analyse gene patterns in their environmental context
Background: Modern sequencing technologies allow rapid sequencing and bioinformatic analysis of genomes and metagenomes. With every new sequencing project a vast number of new pro...
Uta Bohnebeck, Thierry Lombardot, Renzo Kottmann, ...
NAR
2007
117views more  NAR 2007»
15 years 1 months ago
FGF: A web tool for Fishing Gene Family in a whole genome database
Gene duplication is an important process in evolution. The availability of genome sequences of a number of organisms has made it possible to conduct comprehensive searches for dup...
Hongkun Zheng, Junjie Shi, Xiaodong Fang, Yuan Li,...
BMCBI
2011
14 years 5 months ago
GPCR-SSFE: A comprehensive database of G-protein-coupled receptor template predictions and homology models
Background: G protein-coupled receptors (GPCRs) transduce a wide variety of extracellular signals to within the cell and therefore have a key role in regulating cell activity and ...
Catherine L. Worth, Annika Kreuchwig, Gunnar Klein...
CSB
2003
IEEE
176views Bioinformatics» more  CSB 2003»
15 years 7 months ago
3D Structural Homology Detection via Unassigned Residual Dipolar Couplings
Recognition of a protein’s fold provides valuable information about its function. While many sequence-based homology prediction methods exist, an important challenge remains: tw...
Christopher James Langmead, Bruce Randall Donald
STOC
2009
ACM
144views Algorithms» more  STOC 2009»
16 years 2 months ago
Homology flows, cohomology cuts
We describe the first algorithm to compute maximum flows in surface-embedded graphs in near-linear time. Specifically, given a graph embedded on a surface of genus g, with two spe...
Erin W. Chambers, Jeff Erickson, Amir Nayyeri