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BMCBI
2010
131views more  BMCBI 2010»
15 years 1 months ago
Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity
Background: The dynamic motions of many proteins are central to their function. It therefore follows that the dynamic requirements of a protein are evolutionary constrained. In or...
Márton Münz, Rune B. Lyngsø, Jo...
DNA
2011
Springer
227views Bioinformatics» more  DNA 2011»
14 years 6 months ago
Cooperative Assembly Systems
Several molecular systems form large-scale objects. One would like to understand their assembly and how this assembly is regulated. As a first step, we investigate the phase trans...
Vincent Danos, Heinz Koeppl, John Wilson-Kanamori
KDD
2012
ACM
164views Data Mining» more  KDD 2012»
13 years 9 months ago
SeqiBloc: mining multi-time spanning blockmodels in dynamic graphs
Blockmodelling is an important technique for decomposing graphs into sets of roles. Vertices playing the same role have similar patterns of interactions with vertices in other rol...
Jeffrey Chan, Wei Liu, Christopher Leckie, James B...
ESSLLI
1999
Springer
15 years 11 months ago
Towards Discontinuous Grammar
This paper presents a grammar formalism in which constituent graphs are unions of a continuous surface tree and a discontinuous deep tree. The formalism has an object-oriented desi...
Matthias T. Kromann
BMCBI
2007
156views more  BMCBI 2007»
15 years 6 months ago
Accuracy of structure-based sequence alignment of automatic methods
Background: Accurate sequence alignments are essential for homology searches and for building three-dimensional structural models of proteins. Since structure is better conserved ...
Changhoon Kim, Byungkook Lee