Background: The dynamic motions of many proteins are central to their function. It therefore follows that the dynamic requirements of a protein are evolutionary constrained. In or...
Several molecular systems form large-scale objects. One would like to understand their assembly and how this assembly is regulated. As a first step, we investigate the phase trans...
Blockmodelling is an important technique for decomposing graphs into sets of roles. Vertices playing the same role have similar patterns of interactions with vertices in other rol...
Jeffrey Chan, Wei Liu, Christopher Leckie, James B...
This paper presents a grammar formalism in which constituent graphs are unions of a continuous surface tree and a discontinuous deep tree. The formalism has an object-oriented desi...
Background: Accurate sequence alignments are essential for homology searches and for building three-dimensional structural models of proteins. Since structure is better conserved ...