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DM
2008
100views more  DM 2008»
15 years 4 months ago
Staircase tilings and k-Catalan structures
Many interesting combinatorial objects are enumerated by the k-Catalan numbers, one possible generalization of the Catalan numbers. We will present a new combinatorial object that...
Silvia Heubach, Nelson Y. Li, Toufik Mansour
BMCBI
2006
86views more  BMCBI 2006»
15 years 4 months ago
MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
Background: Non-coding DNA sequences comprise a very large proportion of the total genomic content of mammals, most other vertebrates, many invertebrates, and most plants. Unravel...
Jun Wang, Peter D. Keightley, Toby Johnson
BMCBI
2006
108views more  BMCBI 2006»
15 years 4 months ago
Probe set algorithms: is there a rational best bet?
Affymetrix microarrays have become a standard experimental platform for studies of mRNA expression profiling. Their success is due, in part, to the multiple oligonucleotide featur...
Jinwook Seo, Eric P. Hoffman
BMCBI
2006
143views more  BMCBI 2006»
15 years 4 months ago
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences
Background: The estimation of the difference between two evolutionary distances within a triplet of homologs is a common operation that is used for example to determine which of t...
Christophe Dessimoz, Manuel Gil, Adrian Schneider,...
BMCBI
2006
103views more  BMCBI 2006»
15 years 4 months ago
Meta-All: a system for managing metabolic pathway information
Background: Many attempts are being made to understand biological subjects at a systems level. A major resource for these approaches are biological databases, storing manifold inf...
Stephan Weise, Ivo Grosse, Christian Klukas, Dirk ...
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