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NAR
2011
208views Computer Vision» more  NAR 2011»
14 years 2 months ago
The UCSC Genome Browser database: update 2011
The University of California, Santa Cruz Genome Browser (http://genome.ucsc.edu) offers online access to a database of genomic sequence and annotation data for a wide variety of o...
Pauline A. Fujita, Brooke L. Rhead, Ann S. Zweig, ...
BMCBI
2010
138views more  BMCBI 2010»
14 years 12 months ago
A database and API for variation, dense genotyping and resequencing data
Background: Advances in sequencing and genotyping technologies are leading to the widespread availability of multi-species variation data, dense genotype data and large-scale rese...
Daniel Rios, William M. McLaren, Yuan Chen, Ewan B...
79
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BMCBI
2010
240views more  BMCBI 2010»
14 years 12 months ago
CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse
Background: Transcription Factors (TFs) and microRNAs (miRNAs) are key players for gene expression regulation in higher eukaryotes. In the last years, a large amount of bioinforma...
Olivier Friard, Angela Re, Daniela Taverna, Michel...
87
Voted
NAR
2008
94views more  NAR 2008»
14 years 11 months ago
The Gene Ontology project in 2008
The Gene Ontology (GO) project (http://www.gene ontology.org/) provides a set of structured, controlled vocabularies for community use in annotating genes, gene products and seque...
BMCBI
2008
163views more  BMCBI 2008»
14 years 12 months ago
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Background: High-throughput genome biological experiments yield large and multifaceted datasets that require flexible and user-friendly analysis tools to facilitate their interpre...
Frédéric Chalmel, Michael Primig