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CORR
2010
Springer
149views Education» more  CORR 2010»
14 years 9 months ago
Pebbling and Branching Programs Solving the Tree Evaluation Problem
We study restricted computation models related to the tree evaluation problem. The TEP was introduced in earlier work as a simple candidate for the (very) long term goal of separa...
Dustin Wehr
74
Voted
BMCBI
2006
145views more  BMCBI 2006»
14 years 9 months ago
Querying the public databases for sequences using complex keywords contained in the feature lines
Background: High throughput technologies often require the retrieval of large data sets of sequences. Retrieval of EMBL or GenBank entries using keywords is easy using tools such ...
Olivier Croce, Michaël Lamarre, Richard Chris...
BMCBI
2006
92views more  BMCBI 2006»
14 years 9 months ago
Similarity-based gene detection: using COGs to find evolutionarily-conserved ORFs
Background: Experimental verification of gene products has not kept pace with the rapid growth of microbial sequence information. However, existing annotations of gene locations c...
Bradford C. Powell, Clyde A. Hutchison III
BMCBI
2006
95views more  BMCBI 2006»
14 years 9 months ago
Discrete profile comparison using information bottleneck
Sequence homologs are an important source of information about proteins. Amino acid profiles, representing the position-specific mutation probabilities found in profiles, are a ri...
Sean O'Rourke, Gal Chechik, Robin Friedman, Eleaza...
94
Voted
BMCBI
2006
153views more  BMCBI 2006»
14 years 9 months ago
Automatic document classification of biological literature
Background: Document classification is a wide-spread problem with many applications, from organizing search engine snippets to spam filtering. We previously described Textpresso, ...
David Chen, Hans-Michael Müller, Paul W. Ster...