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WOB
2004
120views Bioinformatics» more  WOB 2004»
14 years 10 months ago
Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
ABSTRACT. Reconfigurable systolic arrays can be adapted to efficiently resolve a wide spectrum of computational problems; parallelism is naturally explored in systolic arrays and r...
Ricardo P. Jacobi, Mauricio Ayala-Rincón, L...
EUROMICRO
2006
IEEE
15 years 1 months ago
Building Reconfigurable Component-Based OS with THINK
Dynamic reconfiguration allows modifying a system during its execution, and can be used to apply patches and updates, to implement adaptive systems, dynamic instrumentation, or to...
Juraj Polakovic, Ali Erdem Özcan, Jean-Bernar...
ISCAS
2005
IEEE
129views Hardware» more  ISCAS 2005»
15 years 3 months ago
A reconfigurable architecture for scanning biosequence databases
—Unknown protein sequences are often compared to a set of known sequences (a database scan) to detect functional similarities. Even though efficient dynamic programming algorithm...
Timothy F. Oliver, Bertil Schmidt, Douglas L. Mask...
FDL
2003
IEEE
15 years 2 months ago
Using Rewriting-Logic Notation for Funcional Verification in Data-Stream Based Reconfigurable Computing
Reconfigurable Systolic Arrays are a generalization of Systolic Arrays where node operations and interconnections can be redefined even at run time. This flexibility increases the...
Mauricio Ayala-Rincón, Ricardo P. Jacobi, C...
ARC
2008
Springer
112views Hardware» more  ARC 2008»
14 years 11 months ago
Optimal Unroll Factor for Reconfigurable Architectures
Abstract. Loops are an important source of optimization. In this paper, we address such optimizations for those cases when loops contain kernels mapped on reconfigurable fabric. We...
Ozana Silvia Dragomir, Elena Moscu Panainte, Koen ...