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BMCBI
2011
14 years 9 months ago
Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform
Background: Copy number data are routinely being extracted from genome-wide association study chips using a variety of software. We empirically evaluated and compared four freely-...
Jeanette E. Eckel-Passow, Elizabeth J. Atkinson, S...
BMCBI
2011
14 years 9 months ago
Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence
Background: Alternative splicing of pre-mature RNA is an important process eukaryotes utilize to increase their repertoire of different protein products. Several types of differen...
Holger Pillmann, Klas Hatje, Florian Odronitz, Bjo...
BMCBI
2011
14 years 9 months ago
Gene set analysis for longitudinal gene expression data
Background: Gene set analysis (GSA) has become a successful tool to interpret gene expression profiles in terms of biological functions, molecular pathways, or genomic locations. ...
Ke Zhang, Haiyan Wang, Arne C. Bathke, Solomon W. ...
BMCBI
2011
14 years 9 months ago
AMDORAP: Non-targeted metabolic profiling based on high-resolution LC-MS
Background: Liquid chromatography-mass spectrometry (LC-MS) utilizing the high-resolution power of an orbitrap is an important analytical technique for both metabolomics and prote...
Hiroki Takahashi, Takuya Morimoto, Naotake Ogasawa...
CC
2011
Springer
270views System Software» more  CC 2011»
14 years 9 months ago
Subregion Analysis and Bounds Check Elimination for High Level Arrays
For decades, the design and implementation of arrays in programming languages has reflected a natural tension between productivity and performance. Recently introduced HPCS langua...
Mackale Joyner, Zoran Budimlic, Vivek Sarkar
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