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BMCBI
2010
112views more  BMCBI 2010»
14 years 10 months ago
Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design
Background: Empirical scoring functions have proven useful in protein structure modeling. Most such scoring functions depend on protein side chain conformations. However, backbone...
Andrew J. Bordner
TON
2010
127views more  TON 2010»
14 years 5 months ago
Queue Dynamics With Window Flow Control
This paper develops a new model that describes the queueing process of a communication network when data sources use window flow control. The model takes into account the burstines...
Ao Tang, Lachlan L. H. Andrew, Krister Jacobsson, ...
BMCBI
2008
149views more  BMCBI 2008»
14 years 10 months ago
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning
Background: Automated extraction of protein-protein interactions (PPI) is an important and widely studied task in biomedical text mining. We propose a graph kernel based approach ...
Antti Airola, Sampo Pyysalo, Jari Björne, Tap...
RECOMB
2003
Springer
15 years 11 months ago
Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts
Background: Transcriptional regulation in eukaryotes often involves multiple transcription factors binding to the same transcription control region, and to understand the regulato...
Derek Y. Chiang, Alan M. Moses, Manolis Kamvysseli...
ER
2007
Springer
97views Database» more  ER 2007»
15 years 4 months ago
Towards Active Conceptual Modelling for Sudden Events
There are a number of issues for information systems which are required to collect data urgently that are not well accommodated by current conceptual modelling methodologies and a...
John F. Roddick, Aaron Ceglar, Denise de Vries