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» Identifying Structural Motifs in Proteins
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ISMB
1998
15 years 3 months ago
Modeling Protein Homopolymeric Repeats: Possible Polyglutamine Structural Motifs for Huntington's Disease
Wedescribe a prototype system (Poly-X) for assisting an expert user in modelingprotein repeats. Poly-X reduces the large numberof degrees of freedomrequired to specify a protein m...
Richard H. Lathrop, Malcolm S. Casale, Douglas J. ...
BMCBI
2004
77views more  BMCBI 2004»
15 years 1 months ago
A structural study for the optimisation of functional motifs encoded in protein sequences
Background: A large number of PROSITE patterns select false positives and/or miss known true positives. It is possible that
Allegra Via, Manuela Helmer-Citterich
BIOINFORMATICS
2010
98views more  BIOINFORMATICS 2010»
14 years 11 months ago
Characterizing the regularity of tetrahedral packing motifs in protein tertiary structure
Ryan Day, Kristin P. Lennox, David B. Dahl, Marina...
BMCBI
2010
123views more  BMCBI 2010»
14 years 9 months ago
Predicting conserved protein motifs with Sub-HMMs
Background: Profile HMMs (hidden Markov models) provide effective methods for modeling the conserved regions of protein families. A limitation of the resulting domain models is th...
Kevin Horan, Christian R. Shelton, Thomas Girke
NAR
1998
161views more  NAR 1998»
15 years 1 months ago
Touring protein fold space with Dali/FSSP
The FSSP database and its new supplement, the Dali Domain Dictionary, present a continuously updated classification of all known 3D protein structures. The classification is deriv...
Liisa Holm, Chris Sander