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» Identifying Structural Motifs in Proteins
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BMCBI
2006
141views more  BMCBI 2006»
15 years 2 months ago
Identification of consensus RNA secondary structures using suffix arrays
Background: The identification of a consensus RNA motif often consists in finding a conserved secondary structure with minimum free energy in an ensemble of aligned sequences. How...
Mohammad Anwar, Truong Nguyen, Marcel Turcotte
CAD
2008
Springer
15 years 2 months ago
Shape modeling and matching in identifying 3D protein structures
Sasakthi S. Abeysinghe, Tao Ju, Matthew L. Baker, ...
JCB
2000
71views more  JCB 2000»
15 years 1 months ago
Structure Comparison and Structure Patterns
This article investigates aspects of pairwise and multiple structure comparison, and the problem of automatically discover common patterns in a set of structures. Descriptions and...
Ingvar Eidhammer, Inge Jonassen, William R. Taylor
BMCBI
2006
145views more  BMCBI 2006»
15 years 2 months ago
Fast-Find: A novel computational approach to analyzing combinatorial motifs
Background: Many vital biological processes, including transcription and splicing, require a combination of short, degenerate sequence patterns, or motifs, adjacent to defined seq...
Micah Hamady, Erin Peden, Rob Knight, Ravinder Sin...
BMCBI
2010
122views more  BMCBI 2010»
15 years 2 months ago
Fast and accurate protein substructure searching with simulated annealing and GPUs
Background: Searching a database of protein structures for matches to a query structure, or occurrences of a structural motif, is an important task in structural biology and bioin...
Alex Stivala, Peter J. Stuckey, Anthony Wirth