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BMCBI
2008
179views more  BMCBI 2008»
15 years 1 months ago
Building pathway clusters from Random Forests classification using class votes
Background: Recent years have seen the development of various pathway-based methods for the analysis of microarray gene expression data. These approaches have the potential to bri...
Herbert Pang, Hongyu Zhao
TREC
2003
15 years 2 months ago
Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics
The lack of discipline and consistency in gene naming poses a formidable challenge to researchers in locating relevant information sources in the genomics literature. The research...
Mehmet Kayaalp, Alan R. Aronson, Susanne M. Humphr...
BMCBI
2011
14 years 8 months ago
Motif-guided sparse decomposition of gene expression data for regulatory module identification
Background: Genes work coordinately as gene modules or gene networks. Various computational approaches have been proposed to find gene modules based on gene expression data; for e...
Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggi...
BMCBI
2010
155views more  BMCBI 2010»
15 years 1 months ago
FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases
Background: Whole genome association studies using highly dense single nucleotide polymorphisms (SNPs) are a set of methods to identify DNA markers associated with variation in a ...
Stephen J. Goodswen, Cedric Gondro, Nathan S. Wats...
BMCBI
2006
186views more  BMCBI 2006»
15 years 1 months ago
Systematic gene function prediction from gene expression data by using a fuzzy nearest-cluster method
Background: Quantitative simultaneous monitoring of the expression levels of thousands of genes under various experimental conditions is now possible using microarray experiments....
Xiaoli Li, Yin-Chet Tan, See-Kiong Ng