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BMCBI
2008
126views more  BMCBI 2008»
15 years 1 months ago
c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
Katerina Kechris, Hao Li
BMCBI
2008
113views more  BMCBI 2008»
15 years 1 months ago
SynBlast: Assisting the analysis of conserved synteny information
Motivation: In the last years more than 20 vertebrate genomes have been sequenced, and the rate at which genomic DNA information becomes available is rapidly accelerating. Gene du...
Jörg Lehmann, Peter F. Stadler, Sonja J. Proh...
BMCBI
2006
117views more  BMCBI 2006»
15 years 1 months ago
Analysis of gene expression changes in relation to toxicity and tumorigenesis in the livers of Big Blue transgenic rats fed comf
Background: Comfrey is consumed by humans as a vegetable and a tea, and has been used as an herbal medicine for more than 2000 years. Comfrey, however, is hepatotoxic in livestock...
Nan Mei, Lei Guo, Lu Zhang 0013, Leming M. Shi, Yo...
BMCBI
2008
144views more  BMCBI 2008»
15 years 1 months ago
WGCNA: an R package for weighted correlation network analysis
Background: Correlation networks are increasingly being used in bioinformatics applications. For example, weighted gene co-expression network analysis is a systems biology method ...
Peter Langfelder, Steve Horvath
MICCAI
2005
Springer
16 years 2 months ago
Hybrid Segmentation Framework for Tissue Images Containing Gene Expression Data
Associating speci c gene activity with speci c functional locations in the brain anatomy results in a greater understanding of the role of the gene's products. To perform such...
Musodiq Bello, Tao Ju, Joe D. Warren, James Carson...