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BMCBI
2006
136views more  BMCBI 2006»
14 years 11 months ago
Metric for Measuring the Effectiveness of Clustering of DNA Microarray Expression
Background: The recent advancement of microarray technology with lower noise and better affordability makes it possible to determine expression of several thousand genes simultane...
Raja Loganantharaj, Satish Cheepala, John Clifford
BMCBI
2006
103views more  BMCBI 2006»
14 years 11 months ago
Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequili
Background: The discovery of cis-regulatory motifs still remains a challenging task even though the number of sequenced genomes is constantly growing. Computational analyses using...
Kenneth W. Berendzen, Kurt Stüber, Klaus Hart...
BMCBI
2006
144views more  BMCBI 2006»
14 years 11 months ago
ProFAT: a web-based tool for the functional annotation of protein sequences
Background: The functional annotation of proteins relies on published information concerning their close and remote homologues in sequence databases. Evidence for remote sequence ...
Charles Richard Bradshaw, Vineeth Surendranath, Bi...
BMCBI
2006
111views more  BMCBI 2006»
14 years 11 months ago
Tools for integrated sequence-structure analysis with UCSF Chimera
Background: Comparing related structures and viewing the structures in the context of sequence alignments are important tasks in protein structure-function research. While many pr...
Elaine C. Meng, Eric F. Pettersen, Gregory S. Couc...
BSL
2006
114views more  BSL 2006»
14 years 11 months ago
Schemata: The Concept of Schema in the History of Logic
Schemata have played important roles in logic since Aristotle's Prior Analytics. The syllogistic figures and moods can be taken to be argument schemata as can the rules of the...
John Corcoran