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BMCBI
2007
152views more  BMCBI 2007»
13 years 6 months ago
Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography
Background: Coalescent simulations have proven very useful in many population genetics studies. In order to arrive to meaningful conclusions, it is important that these simulation...
Miguel Arenas, David Posada
FPGA
2004
ACM
119views FPGA» more  FPGA 2004»
13 years 11 months ago
A quantitative analysis of the speedup factors of FPGAs over processors
The speedup over a microprocessor that can be achieved by implementing some programs on an FPGA has been extensively reported. This paper presents an analysis, both quantitative a...
Zhi Guo, Walid A. Najjar, Frank Vahid, Kees A. Vis...
POPL
2007
ACM
14 years 6 months ago
Preferential path profiling: compactly numbering interesting paths
Path profiles provide a more accurate characterization of a program's dynamic behavior than basic block or edge profiles, but are relatively more expensive to collect. This h...
Kapil Vaswani, Aditya V. Nori, Trishul M. Chilimbi
OSDI
1996
ACM
13 years 7 months ago
Automatic Compiler-Inserted I/O Prefetching for Out-of-Core Applications
Current operating systems offer poor performance when a numeric application's working set does not fit in main memory. As a result, programmers who wish to solve "out-of...
Todd C. Mowry, Angela K. Demke, Orran Krieger
ICCS
2001
Springer
13 years 10 months ago
High-Performance Algorithm Engineering for Computational Phylogenetics
Abstract. Phylogeny reconstruction from molecular data poses complex optimization problems: almost all optimization models are NP-hard and thus computationally intractable. Yet app...
Bernard M. E. Moret, David A. Bader, Tandy Warnow