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    BMCBI
    2005
    108views more  BMCBI 2005»
    A linear memory algorithm for Baum-Welch training
    13 years 6 months ago
    A linear memory algorithm for Baum-Welch training
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    Background: Baum-Welch training is an expectation-maximisation algorithm for training the emission and transition probabilities of hidden Markov models in a fully automated way. I...
    István Miklós, Irmtraud M. Meyer
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    WSDM
    2010
    ACM
    322views Data Mining» more  WSDM 2010»
    Inferring Search Behaviors Using Partially Observable Markov (POM) Model
    14 years 3 months ago
    Inferring Search Behaviors Using Partially Observable Markov (POM) Model
    Download  www.wsdm-conference.org
    This article describes an application of the partially observable Markov (POM) model to the analysis of a large scale commercial web search log. Mathematically, POM is a variant o...
    Kuansan Wang, Nikolas Gloy, Xiaolong Li
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    BMCBI
    2004
    208views more  BMCBI 2004»
    Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
    13 years 6 months ago
    Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
    Download  www.biomedcentral.com
    Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
    Vadim Alexandrov, Mark Gerstein
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    BMCBI
    2005
    87views more  BMCBI 2005»
    Efficient decoding algorithms for generalized hidden Markov model gene finders
    13 years 6 months ago
    Efficient decoding algorithms for generalized hidden Markov model gene finders
    Download  www.biomedcentral.com
    Background: The Generalized Hidden Markov Model (GHMM) has proven a useful framework for the task of computational gene prediction in eukaryotic genomes, due to its flexibility an...
    William H. Majoros, Mihaela Pertea, Arthur L. Delc...
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    SC
    2005
    ACM
    170views Applied Computing» more  SC 2005»
    ClawHMMER: A Streaming HMMer-Search Implementation
    13 years 11 months ago
    ClawHMMER: A Streaming HMMer-Search Implementation
    Download  graphics.stanford.edu
    The proliferation of biological sequence data has motivated the need for an extremely fast probabilistic sequence search. One method for performing this search involves evaluating...
    Daniel Reiter Horn, Mike Houston, Pat Hanrahan
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