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BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
16 years 28 days ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
BMCBI
2004
150views more  BMCBI 2004»
15 years 6 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
FPL
2010
Springer
188views Hardware» more  FPL 2010»
15 years 4 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
SAC
2005
ACM
16 years 10 hour ago
Node clustering based on link delay in P2P networks
Peer-to-peer (P2P) has become an important computing model because of its adaptation, self-organization and autonomy etc. But efficient organization of the nodes in P2P networks i...
Wei Zheng, Sheng Zhang, Yi Ouyang, Fillia Makedon,...
IWCC
1999
IEEE
15 years 10 months ago
Nomad: A Scalable Operating System for Clusters of Uni and Multiprocessors
The recent improvements in workstation and interconnection network performance have popularized the clusters of off-the-shelf workstations. However, the usefulness of these cluste...
Eduardo Pinheiro, Ricardo Bianchini