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IPPS
2009
IEEE
15 years 11 months ago
Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
APPT
2009
Springer
15 years 11 months ago
Computational Performance of a Parallelized Three-Dimensional High-Order Spectral Element Toolbox
In this paper, a comprehensive performance review of an MPI-based high-order three-dimensional spectral element method C++ toolbox is presented. The focus is put on the performance...
Christoph Bosshard, Roland Bouffanais, Christian C...
ICCS
2009
Springer
15 years 11 months ago
Modular, Fine-Grained Adaptation of Parallel Programs
We present a modular approach to realizing fine-grained adaptation of program behavior in a parallel environment. Using a compositional framework based on function call intercepti...
Pilsung Kang 0002, Naresh K. C. Selvarasu, Naren R...
COMPGEOM
2009
ACM
15 years 11 months ago
Parallel geometric algorithms for multi-core computers
Computers with multiple processor cores using shared memory are now ubiquitous. In this paper, we present several parallel geometric algorithms that specifically target this envi...
Vicente H. F. Batista, David L. Millman, Sylvain P...
ICPP
2008
IEEE
15 years 11 months ago
Parallel Inferencing for OWL Knowledge Bases
Abstract— We examine the problem of parallelizing the inferencing process for OWL knowledge-bases. A key challenge in this problem is partitioning the computational workload of t...
Ramakrishna Soma, Viktor K. Prasanna