We present an optimized parallelization scheme for molecular dynamics simulations of large biomolecular systems, implemented in the production-quality molecular dynamics program N...
Robert Brunner, James C. Phillips, Laxmikant V. Ka...
Collective operations on multiple distributed objects are a powerful means to coordinate parallel computations. In this paper we present an inheritance based approach to implement ...
Abstract. In this paper we describe how the language of Communicating Sequential Processes CSP has been applied to the analysis of a transport layer protocol used in the implementa...
Andrew C. Simpson, Jonathan M. D. Hill, Stephen R....
Abstract. With the growing importance of fast system area networks in the parallel community, it is becoming common for message passing programs to run in multi-programming environ...
Frederick C. Wong, Andrea C. Arpaci-Dusseau, David...
Abstract—This paper describes an algorithm for deriving data and computation partitions on scalable shared memory multiprocessors. The algorithm establishes affinity relationshi...