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STOC
2000
ACM
156views Algorithms» more  STOC 2000»
15 years 2 months ago
Near optimal multiple alignment within a band in polynomial time
Multiple sequence alignment is a fundamental problem in computational biology. Because of its notorious difficulties, aligning sequences within a constant band (c-diagonal) is a ...
Ming Li, Bin Ma, Lusheng Wang
IROS
2006
IEEE
96views Robotics» more  IROS 2006»
15 years 3 months ago
Topological Mapping Inspired by Techniques in DNA Sequence Alignment
Abstract— This paper introduces a method of building topological maps using sequences of images and the approximate string matching algorithm, which is commonly used in DNA seque...
Alan M. Zhang, Lindsay Kleeman, R. Andrew Russell
WOB
2004
120views Bioinformatics» more  WOB 2004»
14 years 11 months ago
Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
ABSTRACT. Reconfigurable systolic arrays can be adapted to efficiently resolve a wide spectrum of computational problems; parallelism is naturally explored in systolic arrays and r...
Ricardo P. Jacobi, Mauricio Ayala-Rincón, L...
SAGT
2010
Springer
164views Game Theory» more  SAGT 2010»
14 years 8 months ago
On Nash-Equilibria of Approximation-Stable Games
Abstract. One reason for wanting to compute an (approximate) Nash equilibrium of a game is to predict how players will play. However, if the game has multiple equilibria that are f...
Pranjal Awasthi, Maria-Florina Balcan, Avrim Blum,...
APPROX
2011
Springer
234views Algorithms» more  APPROX 2011»
13 years 9 months ago
Streaming Algorithms with One-Sided Estimation
Abstract. We study the space complexity of randomized streaming algorithms that provide one-sided approximation guarantees; e.g., the algorithm always returns an overestimate of th...
Joshua Brody, David P. Woodruff