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CIKM
2008
Springer
14 years 11 months ago
A new method for indexing genomes using on-disk suffix trees
We propose a new method to build persistent suffix trees for indexing the genomic data. Our algorithm DiGeST (Disk-Based Genomic Suffix Tree) improves significantly over previous ...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
92
Voted
DASFAA
2003
IEEE
151views Database» more  DASFAA 2003»
15 years 2 months ago
Approximate String Matching in DNA Sequences
Approximate string matching on large DNA sequences data is very important in bioinformatics. Some studies have shown that suffix tree is an efficient data structure for approxim...
Lok-Lam Cheng, David Wai-Lok Cheung, Siu-Ming Yiu
VLDB
2005
ACM
93views Database» more  VLDB 2005»
15 years 2 months ago
Indexing Mixed Types for Approximate Retrieval
In various applications such as data cleansing, being able to retrieve categorical or numerical attributes based on notions of approximate match (e.g., edit distance, numerical di...
Liang Jin, Nick Koudas, Chen Li, Anthony K. H. Tun...
77
Voted
COOPIS
2004
IEEE
15 years 1 months ago
Supporting Similarity Operations Based on Approximate String Matching on the Web
Querying and integrating sources of structured data from the Web in most cases requires similarity-based concepts to deal with data level conflicts. This is due to the often errone...
Eike Schallehn, Ingolf Geist, Kai-Uwe Sattler
DEXAW
2006
IEEE
140views Database» more  DEXAW 2006»
15 years 3 months ago
String-Matching and Update through Algebraic Signatures in Scalable Distributed Data Structures
: Scalable Distributed Data Structures (SDDSs) store large scalable files over a distributed RAM of nodes in a grid or a P2P network. The files scale transparently for the applicat...
Riad Mokadem, Witold Litwin