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97
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WABI
2007
Springer
15 years 5 months ago
Topology Independent Protein Structural Alignment
Abstract. Protein structural alignment is an indispensable tool used for many different studies in bioinformatics. Most structural alignment algorithms assume that the structural ...
Joe Dundas, T. Andrew Binkowski, Bhaskar DasGupta,...
128
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COCOON
2004
Springer
15 years 5 months ago
An Approximation Algorithm for Weighted Weak Vertex Cover Problem in Undirected Graphs
The problem of efficiently monitoring the network flow is regarded as the one to find out the minimum weighted weak vertex cover set for a given graph G = (V, E) with weight func...
Yong Zhang, Hong Zhu
FOCS
2007
IEEE
15 years 6 months ago
On the Optimality of Planar and Geometric Approximation Schemes
We show for several planar and geometric problems that the best known approximation schemes are essentially optimal with respect to the dependence on ǫ. For example, we show that...
Dániel Marx
ESA
2011
Springer
251views Algorithms» more  ESA 2011»
13 years 11 months ago
Improved Approximation Algorithms for Bipartite Correlation Clustering
In this work we study the problem of Bipartite Correlation Clustering (BCC), a natural bipartite counterpart of the well studied Correlation Clustering (CC) problem. Given a bipart...
Nir Ailon, Noa Avigdor-Elgrabli, Edo Liberty, Anke...
120
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ICALP
2004
Springer
15 years 5 months ago
The Minimum-Entropy Set Cover Problem
We study graph orientations that minimize the entropy of the in-degree sequence. The problem of finding such an orientation is an interesting special case of the minimum entropy ...
Eran Halperin, Richard M. Karp