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BMCBI
2006
117views more  BMCBI 2006»
14 years 11 months ago
Incorporating background frequency improves entropy-based residue conservation measures
Background: Several entropy-based methods have been developed for scoring sequence conservation in protein multiple sequence alignments. High scoring amino acid positions may corr...
Kai Wang, Ram Samudrala
BMCBI
2007
124views more  BMCBI 2007»
14 years 11 months ago
Analysis on multi-domain cooperation for predicting protein-protein interactions
Background: Domains are the basic functional units of proteins. It is believed that protein-protein interactions are realized through domain interactions. Revealing multi-domain c...
Rui-Sheng Wang, Yong Wang, Ling-Yun Wu, Xiang-Sun ...
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GCB
2003
Springer
164views Biometrics» more  GCB 2003»
15 years 4 months ago
Integrative machine learning approach for multi-class SCOP protein fold classification
: Classification and prediction of protein structure has been a central research theme in structural bioinformatics. Due to the imbalanced distribution of proteins over multi SCOP ...
Aik Choon Tan, David Gilbert, Yves Deville
SSDBM
2006
IEEE
163views Database» more  SSDBM 2006»
15 years 5 months ago
ACache: Using Caching to Improve the Performance of Multiple Sequence Alignments
Multiple sequence alignment represents a class of powerful bioinformatics tools with many uses in computational biology ranging from discovery of characteristic motifs and conserv...
Xun Tu, Kajal T. Claypool, Cindy X. Chen
BMCBI
2007
98views more  BMCBI 2007»
14 years 11 months ago
Evaluation of 3D-Jury on CASP7 models
Background: 3D-Jury, the structure prediction consensus method publicly available in the Meta Server http://meta.bioinfo.pl/, was evaluated using models gathered in the 7th round ...
László Kaján, Leszek Rychlews...