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115
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BMCBI
2010
124views more  BMCBI 2010»
15 years 26 days ago
A Dynamic Noise Level Algorithm for Spectral Screening of Peptide MS/MS Spectra
Background: High-throughput shotgun proteomics data contain a significant number of spectra from non-peptide ions or spectra of too poor quality to obtain highly confident peptide...
Hua Xu, Michael A. Freitas
91
Voted
CORR
2010
Springer
96views Education» more  CORR 2010»
15 years 26 days ago
LSMR: An iterative algorithm for sparse least-squares problems
Abstract. An iterative method LSMR is presented for solving linear systems Ax = b and leastsquares problem min Ax - b 2, with A being sparse or a fast linear operator. LSMR is base...
David Fong, Michael Saunders
112
Voted
CORR
2008
Springer
131views Education» more  CORR 2008»
15 years 26 days ago
Deterministically Isolating a Perfect Matching in Bipartite Planar Graphs
We present a deterministic way of assigning small (log bit) weights to the edges of a bipartite planar graph so that the minimum weight perfect matching becomes unique. The isolati...
Samir Datta, Raghav Kulkarni, Sambuddha Roy
CORR
2010
Springer
174views Education» more  CORR 2010»
15 years 26 days ago
Gaussian Process Bandits for Tree Search
We motivate and analyse a new Tree Search algorithm, based on recent advances in the use of Gaussian Processes for bandit problems. We assume that the function to maximise on the ...
Louis Dorard, John Shawe-Taylor
92
Voted
BMCBI
2007
150views more  BMCBI 2007»
15 years 23 days ago
Refining intra-protein contact prediction by graph analysis
Background: Accurate prediction of intra-protein residue contacts from sequence information will allow the prediction of protein structures. Basic predictions of such specific con...
Milana Frenkel-Morgenstern, Rachel Magid, Eran Eya...