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» Improving Random Projections Using Marginal Information
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BMCBI
2006
108views more  BMCBI 2006»
14 years 11 months ago
RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits
Background: Until today, analysis of 16S ribosomal RNA (rRNA) sequences has been the de-facto gold standard for the assessment of phylogenetic relationships among prokaryotes. How...
Hanno Teeling, Frank Oliver Glöckner
SSDBM
2010
IEEE
308views Database» more  SSDBM 2010»
15 years 4 months ago
Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data
The Resource Description Framework (RDF) format is being used by a large number of scientific applications to store and disseminate their datasets. The provenance information, desc...
Satya Sanket Sahoo, Olivier Bodenreider, Pascal Hi...
BMCBI
2008
108views more  BMCBI 2008»
14 years 11 months ago
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance
Background: Motif finding algorithms have developed in their ability to use computationally efficient methods to detect patterns in biological sequences. However the posterior cla...
Ana C. Casimiro, Susana Vinga, Ana T. Freitas, Arl...
BMCBI
2008
142views more  BMCBI 2008»
14 years 11 months ago
Optimal neighborhood indexing for protein similarity search
Background: Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data ...
Pierre Peterlongo, Laurent Noé, Dominique L...
IPMI
2011
Springer
14 years 3 months ago
Globally Optimal Tumor Segmentation in PET-CT Images: A Graph-Based Co-segmentation Method
Tumor segmentation in PET and CT images is notoriously challenging due to the low spatial resolution in PET and low contrast in CT images. In this paper, we proposed a general fram...
Dongfeng Han, John E. Bayouth, Qi Song, Aakant Tau...