We present PIO-HMMER, an enhanced version of MPI-HMMER. PIO-HMMER improves on MPIHMMER’s scalability through the use of parallel I/O and a parallel file system. In addition, we...
Abstract—The Sparse Matrix-Vector Multiplication kernel exhibits limited potential for taking advantage of modern shared memory architectures due to its large memory bandwidth re...
Kornilios Kourtis, Georgios I. Goumas, Nectarios K...
A star graph is a tree of diameter at most two. A star forest is a graph that consists of node-disjoint star graphs. In the spanning star forest problem, given an unweighted graph ...
Ning Chen, Roee Engelberg, C. Thach Nguyen, Prasad...
We present a simple algorithm for the maximum spanning star forest problem. We take advantage of the fact that the problem is a special case of complementary set cover and we adapt...
Stavros Athanassopoulos, Ioannis Caragiannis, Chri...
Processors execute the full dynamic instruction stream to arrive at the final output of a program, yet there exist shorter instruction streams that produce the same overall effec...
Karthik Sundaramoorthy, Zachary Purser, Eric Roten...