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» In Search of Optimal Codes for DNA Computing
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BMCBI
2004
150views more  BMCBI 2004»
14 years 9 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
TJS
2002
160views more  TJS 2002»
14 years 9 months ago
Adaptive Optimizing Compilers for the 21st Century
Historically, compilers have operated by applying a fixed set of optimizations in a predetermined order. We call such an ordered list of optimizations a compilation sequence. This...
Keith D. Cooper, Devika Subramanian, Linda Torczon
BMCBI
2007
148views more  BMCBI 2007»
14 years 9 months ago
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...
DCC
2007
IEEE
15 years 9 months ago
Distortion-Complexity Optimization of the H.264/MPEG-4 AVC Encoder using the GBFOS Algorithm
The H.264/ACV standard provides significant improvements in performance over earlier video coding standards at the cost of increased complexity. Our challenge is to determine H.26...
Rahul Vanam, Eve A. Riskin, Sheila S. Hemami, Rich...
GECCO
2009
Springer
152views Optimization» more  GECCO 2009»
15 years 2 months ago
A data-based coding of candidate strings in the closest string problem
Given a set of strings S of equal lengths over an alphabet Σ, the closest string problem seeks a string over Σ whose maximum Hamming distance to any of the given strings is as s...
Bryant A. Julstrom