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» In Search of Optimal Codes for DNA Computing
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IEEEPACT
2009
IEEE
15 years 4 months ago
Automatic Tuning of Discrete Fourier Transforms Driven by Analytical Modeling
—Analytical models have been used to estimate optimal values for parameters such as tile sizes in the context of loop nests. However, important algorithms such as fast Fourier tr...
Basilio B. Fraguela, Yevgen Voronenko, Markus P&uu...
98
Voted
SC
2004
ACM
15 years 2 months ago
Rating Compiler Optimizations for Automatic Performance Tuning
To achieve maximum performance gains through compiler optimization, most automatic performance tuning systems use a feed-back directed approach to rate the code versions generated...
Zhelong Pan, Rudolf Eigenmann
BIOINFORMATICS
2012
12 years 12 months ago
Epigenetic priors for identifying active transcription factor binding sites
Motivation Accurate knowledge of the genome-wide binding of transcription factors in a particular cell type or under a particular condition is necessary for understanding transcri...
Gabriel Cuellar-Partida, Fabian A. Buske, Robert C...
CODES
2001
IEEE
15 years 1 months ago
Hybrid global/local search strategies for dynamic voltage scaling in embedded multiprocessors
In this paper, we explore a hybrid global/local search optimization framework for dynamic voltage scaling in embedded multiprocessor systems. The problem is to find, for a multipr...
Neal K. Bambha, Shuvra S. Bhattacharyya, Jürg...
BMCBI
2008
111views more  BMCBI 2008»
14 years 9 months ago
Probabilistic base calling of Solexa sequencing data
Background: Solexa/Illumina short-read ultra-high throughput DNA sequencing technology produces millions of short tags (up to 36 bases) by parallel sequencing-by-synthesis of DNA ...
Jacques Rougemont, Arnaud Amzallag, Christian Isel...