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113
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BMCBI
2005
152views more  BMCBI 2005»
14 years 11 months ago
CoPub Mapper: mining MEDLINE based on search term co-publication
Background: High throughput microarray analyses result in many differentially expressed genes that are potentially responsible for the biological process of interest. In order to ...
Blaise T. F. Alako, Antoine Veldhoven, Sjozef van ...
FMCO
2005
Springer
143views Formal Methods» more  FMCO 2005»
15 years 5 months ago
Orion: High-Precision Methods for Static Error Analysis of C and C++ Programs
Abstract. We describe the algorithmic and implementation ideas behind a tool, Orion, for finding common programming errors in C and C++ programs using static code analysis. We aim...
Dennis Dams, Kedar S. Namjoshi
SCFBM
2008
87views more  SCFBM 2008»
14 years 11 months ago
Analysis by siRNA_profile program displays novel thermodynamic characteristics of highly functional siRNA molecules
Objective: Here we report the improved results of a new siRNA design program and analysis tool called siRNA_profile that reveals an additional criterion for bioinformatic search o...
Pirkko Muhonen, Ranga N. Parthasarathy, Anthony J....
73
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SAC
2009
ACM
15 years 6 months ago
Exploiting weak dependencies in tree-based search
In this work, our objective is to heuristically discover a simplified form of functional dependencies between variables called weak dependencies. Once discovered, these relations...
Alejandro Arbelaez, Youssef Hamadi
ISMB
1996
15 years 1 months ago
Compact Encoding Strategies for DNA Sequence Similarity Search
Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...
David J. States, Pankaj Agarwal