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BMCBI
2007
112views more  BMCBI 2007»
14 years 9 months ago
PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments
Background: By virtue of their shared ancestry, homologous sequences are similar in their structure and function. Consequently, multiple sequence alignments are routinely used to ...
Daniel R. Caffrey, Paul H. Dana, Vidhya Mathur, Ma...
JSA
2000
175views more  JSA 2000»
14 years 9 months ago
Complete worst-case execution time analysis of straight-line hard real-time programs
In this article, the problem of finding a tight estimate on the worst-case execution time (WCET) of a real-time program is addressed. The analysis is focused on straight-line code...
Friedhelm Stappert, Peter Altenbernd
IPPS
2009
IEEE
15 years 4 months ago
Evaluating the use of GPUs in liver image segmentation and HMMER database searches
In this paper we present the results of parallelizing two life sciences applications, Markov random fieldsbased (MRF) liver segmentation and HMMER’s Viterbi algorithm, using GP...
John Paul Walters, Vidyananth Balu, Suryaprakash K...
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BMCBI
2006
137views more  BMCBI 2006»
14 years 9 months ago
Bounded search for de novo identification of degenerate cis-regulatory elements
Background: The identification of statistically overrepresented sequences in the upstream regions of coregulated genes should theoretically permit the identification of potential ...
Jonathan M. Carlson, Arijit Chakravarty, Radhika S...
BMCBI
2010
196views more  BMCBI 2010»
14 years 6 months ago
Content-based microarray search using differential expression profiles
Background: With the expansion of public repositories such as the Gene Expression Omnibus (GEO), we are rapidly cataloging cellular transcriptional responses to diverse experiment...
Jesse M. Engreitz, Alexander A. Morgan, Joel Dudle...