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» Increased Bit-Parallelism for Approximate String Matching
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FQAS
2009
Springer
127views Database» more  FQAS 2009»
14 years 25 days ago
Finding Top-k Approximate Answers to Path Queries
We consider the problem of finding and ranking paths in semistructured data without necessarily knowing its full structure. The query language we adopt comprises conjunctions of r...
Carlos A. Hurtado, Alexandra Poulovassilis, Peter ...
SIGMOD
2011
ACM
150views Database» more  SIGMOD 2011»
12 years 9 months ago
WHAM: a high-throughput sequence alignment method
Over the last decade the cost of producing genomic sequences has dropped dramatically due to the current so called “next-gen” sequencing methods. However, these next-gen seque...
Yinan Li, Allison Terrell, Jignesh M. Patel
VLDB
2002
ACM
184views Database» more  VLDB 2002»
14 years 6 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
ADC
2008
Springer
141views Database» more  ADC 2008»
14 years 19 days ago
Approximate Retrieval of XML Data with ApproXPath
Several XML query languages have been proposed that use XPath expressions to locate data. But XPath expressions might miss some data because of irregularities in the data and sche...
Lin Xu, Curtis E. Dyreson
SIGIR
1998
ACM
13 years 10 months ago
Fast Searching on Compressed Text Allowing Errors
Abstract We present a fast compression and decompression scheme for natural language texts that allows e cient and exible string matching by searching the compressed text directly....
Edleno Silva de Moura, Gonzalo Navarro, Nivio Zivi...