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BMCBI
2011
14 years 4 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
114
Voted
ISBI
2011
IEEE
14 years 1 months ago
Group sparsity based classification for cervigram segmentation
This paper presents an algorithm to classify pixels in uterine cervix images into two classes, namely normal and abnormal tissues, and simultaneously select relevant features, usi...
Yang Yu, Junzhou Huang, Shaoting Zhang, Christophe...
BMCBI
2011
14 years 1 months ago
A Beta-Mixture Model for Dimensionality Reduction, Sample Classification and Analysis
Background: Patterns of genome-wide methylation vary between tissue types. For example, cancer tissue shows markedly different patterns from those of normal tissue. In this paper ...
Kirsti Laurila, Bodil Oster, Claus L. Andersen, Ph...
JCC
2011
109views more  JCC 2011»
14 years 1 months ago
VoteDock: Consensus docking method for prediction of protein-ligand interactions
: Molecular recognition plays a fundamental role in all biological processes, and that is why great efforts have been made to understand and predict protein–ligand interactions. ...
Dariusz Plewczynski, Michal Lazniewski, Marcin von...
92
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APPROX
2011
Springer
234views Algorithms» more  APPROX 2011»
13 years 10 months ago
Streaming Algorithms with One-Sided Estimation
Abstract. We study the space complexity of randomized streaming algorithms that provide one-sided approximation guarantees; e.g., the algorithm always returns an overestimate of th...
Joshua Brody, David P. Woodruff