A unified framework is applied to solving various sequence comparison problems for run-length encoded strings. All of these algorithms take O(min{mn , m n}) time and O(max{m, n}) s...
A number of biological applications require comparison of large genome strings. Current techniques suffer from both disk I/O and computational cost because of extensive memory req...
Program plagiarism is one of the most significant problems in Computer Science education. Most common plagiarism includes modifying comments, reordering statements, and changing v...
An essential step in comparative reconstruction is to align corresponding phonological segments in the words being compared. To do this, one must search among huge numbers of pote...
We present a new efficient algorithm for exact matching in encoded DNA sequences and on binary strings. Our algorithm combines a multi-pattern version of the Bndm algorithm and a s...