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COCOON
2008
Springer
14 years 11 months ago
Sequence Alignment Algorithms for Run-Length-Encoded Strings
A unified framework is applied to solving various sequence comparison problems for run-length encoded strings. All of these algorithms take O(min{mn , m n}) time and O(max{m, n}) s...
Guan-Shieng Huang, Jia Jie Liu, Yue-Li Wang
PSB
2003
14 years 10 months ago
MAP: Searching Large Genome Databases
A number of biological applications require comparison of large genome strings. Current techniques suffer from both disk I/O and computational cost because of extensive memory req...
Tamer Kahveci, Ambuj K. Singh
FECS
2006
113views Education» more  FECS 2006»
14 years 10 months ago
A Lightweight Program Similarity Detection Model using XML and Levenshtein Distance
Program plagiarism is one of the most significant problems in Computer Science education. Most common plagiarism includes modifying comments, reordering statements, and changing v...
Seo-Young Noh, Sangwoo Kim, Cheonyoung Jung
ACL
1998
14 years 10 months ago
Alignment of Multiple Languages for Historical Comparison
An essential step in comparative reconstruction is to align corresponding phonological segments in the words being compared. To do this, one must search among huge numbers of pote...
Michael A. Covington
CPM
2009
Springer
207views Combinatorics» more  CPM 2009»
15 years 1 months ago
An Efficient Matching Algorithm for Encoded DNA Sequences and Binary Strings
We present a new efficient algorithm for exact matching in encoded DNA sequences and on binary strings. Our algorithm combines a multi-pattern version of the Bndm algorithm and a s...
Simone Faro, Thierry Lecroq