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115
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IPPS
2003
IEEE
15 years 6 months ago
A Fast Algorithm for the Exhaustive Analysis of 12-Nucleotide-Long DNA Sequences. Applications to Human Genomics
We have developed a new algorithm that allows the exhaustive determination of words of up to 12 nucleotides in DNA sequences. It is fast enough as to be used at a genomic scale ru...
Vicente Arnau, Ignacio Marín
105
Voted
SPIRE
2009
Springer
15 years 5 months ago
Faster Algorithms for Sampling and Counting Biological Sequences
Abstract. A set of sequences S is pairwise bounded if the Hamming distance between any pair of sequences in S is at most 2d. The Consensus Sequence problem aims to discern between ...
Christina Boucher
STACS
2001
Springer
15 years 5 months ago
Approximation Algorithms for the Bottleneck Stretch Factor Problem
The stretch factor of a Euclidean graph is the maximum ratio of the distance in the graph between any two points and their Euclidean distance. Given a set S of n points in Rd, we ...
Giri Narasimhan, Michiel H. M. Smid
112
Voted
CPM
2000
Springer
143views Combinatorics» more  CPM 2000»
15 years 5 months ago
A Boyer-Moore Type Algorithm for Compressed Pattern Matching
Abstract. We apply the Boyer–Moore technique to compressed pattern matching for text string described in terms of collage system, which is a formal framework that captures variou...
Yusuke Shibata, Tetsuya Matsumoto, Masayuki Takeda...
FOCS
1999
IEEE
15 years 5 months ago
Approximate Nearest Neighbor Algorithms for Hausdorff Metrics via Embeddings
Hausdorff metrics are used in geometric settings for measuring the distance between sets of points. They have been used extensively in areas such as computer vision, pattern recog...
Martin Farach-Colton, Piotr Indyk