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BMCBI
2007
111views more  BMCBI 2007»
15 years 4 months ago
MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs
Background: A combination of multiple types of transcription factors and cis-regulatory elements is often required for gene expression in eukaryotes, and the combinatorial regulat...
Mamoru Kato, Tatsuhiko Tsunoda
SSDBM
2008
IEEE
149views Database» more  SSDBM 2008»
15 years 10 months ago
Query Planning for Searching Inter-dependent Deep-Web Databases
Increasingly, many data sources appear as online databases, hidden behind query forms, thus forming what is referred to as the deep web. It is desirable to have systems that can pr...
Fan Wang, Gagan Agrawal, Ruoming Jin
164
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BMCBI
2010
123views more  BMCBI 2010»
14 years 11 months ago
Predicting conserved protein motifs with Sub-HMMs
Background: Profile HMMs (hidden Markov models) provide effective methods for modeling the conserved regions of protein families. A limitation of the resulting domain models is th...
Kevin Horan, Christian R. Shelton, Thomas Girke
DBA
2006
236views Database» more  DBA 2006»
15 years 5 months ago
Quantizing Time Series for Efficient Subsequence Matching
Indexing time series data is an interesting problem that has attracted much interest in the research community for the last decade. Traditional indexing methods organize the data ...
Inés Fernando Vega López, Bongki Moo...
EVOW
2010
Springer
15 years 11 months ago
Enhancing Genetic Algorithms by a Trie-Based Complete Solution Archive
Genetic algorithms (GAs) share a common weakness with most other metaheuristics: Candidate solutions are in general revisited multiple times, lowering diversity and wasting preciou...
Günther R. Raidl, Bin Hu