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» Inductive logic programming for gene regulation prediction
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BMCBI
2006
137views more  BMCBI 2006»
15 years 9 days ago
A classification-based framework for predicting and analyzing gene regulatory response
Background: We have recently introduced a predictive framework for studying gene transcriptional regulation in simpler organisms using a novel supervised learning algorithm called...
Anshul Kundaje, Manuel Middendorf, Mihir Shah, Chr...
113
Voted
EDBT
2008
ACM
178views Database» more  EDBT 2008»
16 years 12 days ago
An inductive database and query language in the relational model
In the demonstration, we will present the concepts and an implementation of an inductive database ? as proposed by Imielinski and Mannila ? in the relational model. The goal is to...
Lothar Richter, Jörg Wicker, Kristina Kessler...
ICTAI
2007
IEEE
15 years 6 months ago
ExOpaque: A Framework to Explain Opaque Machine Learning Models Using Inductive Logic Programming
In this paper we developed an Inductive Logic Programming (ILP) based framework ExOpaque that is able to extract a set of Horn clauses from an arbitrary opaque machine learning mo...
Yunsong Guo, Bart Selman
BMCBI
2005
127views more  BMCBI 2005»
15 years 5 days ago
Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification
Background: Gene expression programs depend on recognition of cis elements in promoter region of target genes by transcription factors (TFs), but how TFs regulate gene expression ...
Li-Hsieh Lin, Hsiao-Ching Lee, Wen-Hsiung Li, Bor-...
142
Voted
JOBIM
2000
15 years 3 months ago
InterDB, a Prediction-Oriented Protein Interaction Database for C. elegans
Protein-protein interactions are critical to many biological processes, extending from the formation of cellular macromolecular structures and enzymatic complexes to the regulation...
Nicolas Thierry-Mieg, Laurent Trilling