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» Inference Algorithms for Similarity Networks
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BMCBI
2010
152views more  BMCBI 2010»
14 years 9 months ago
Comparative study of discretization methods of microarray data for inferring transcriptional regulatory networks
Background: Microarray data discretization is a basic preprocess for many algorithms of gene regulatory network inference. Some common discretization methods in informatics are us...
Yong Li, Lili Liu, Xi Bai, Hua Cai, Wei Ji, Dianji...
BIOINFORMATICS
2011
14 years 4 months ago
Integrative network alignment reveals large regions of global network similarity in yeast and human
Motivation: High-throughput methods for detecting molecular interactions have produced large sets of biological network data with much more yet to come. Analogous to sequence alig...
Oleksii Kuchaiev, Natasa Przulj
WWW
2005
ACM
15 years 10 months ago
Association search in semantic web: search + inference
Association search is to search for certain instances in semantic web and then make inferences from and about the instances we have found. In this paper, we propose the problem of...
Bangyong Liang, Jie Tang, Juan-Zi Li
GECCO
2006
Springer
165views Optimization» more  GECCO 2006»
15 years 1 months ago
Comparing mathematical models on the problem of network inference
In this paper we address the problem of finding gene regulatory networks from experimental DNA microarray data. We focus on the evaluation of the performance of different mathemat...
Christian Spieth, Nadine Hassis, Felix Streichert
RECOMB
2002
Springer
15 years 10 months ago
Combining pairwise sequence similarity and support vector machines for remote protein homology detection
One key element in understanding the molecular machinery of the cell is to understand the meaning, or function, of each protein encoded in the genome. A very successful means of i...
Li Liao, William Stafford Noble