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ICPP
2009
IEEE
15 years 11 months ago
Load Balance in the Phylogenetic Likelihood Kernel
—Recent advances in DNA sequencing techniques have led to an unprecedented accumulation and availability of molecular sequence data that needs to be analyzed. This data explosion...
Alexandros Stamatakis, Michael Ott
LION
2009
Springer
114views Optimization» more  LION 2009»
15 years 11 months ago
Substitution Matrices and Mutual Information Approaches to Modeling Evolution
Abstract. Substitution matrices are at the heart of Bioinformatics: sequence alignment, database search, phylogenetic inference, protein family classication are based on Blosum, P...
Stephan Kitchovitch, Yuedong Song, Richard C. van ...
FGR
2008
IEEE
195views Biometrics» more  FGR 2008»
15 years 11 months ago
Regularized active shape model for shape alignment
Active shape model (ASM) statistically represents a shape by a set of well-defined landmark points and models object variations using principal component analysis (PCA). However, ...
Ran He, Zhen Lei, Xiaotong Yuan, Stan Z. Li
IPPS
2008
IEEE
15 years 11 months ago
Reducing the run-time of MCMC programs by multithreading on SMP architectures
The increasing availability of multi-core and multiprocessor architectures provides new opportunities for improving the performance of many computer simulations. Markov Chain Mont...
Jonathan M. R. Byrd, Stephen A. Jarvis, A. H. Bhal...
ICDM
2007
IEEE
289views Data Mining» more  ICDM 2007»
15 years 11 months ago
Latent Dirichlet Conditional Naive-Bayes Models
In spite of the popularity of probabilistic mixture models for latent structure discovery from data, mixture models do not have a natural mechanism for handling sparsity, where ea...
Arindam Banerjee, Hanhuai Shan