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» Inference of Isoforms from Short Sequence Reads
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BMCBI
2010
189views more  BMCBI 2010»
14 years 10 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
COGSR
2011
71views more  COGSR 2011»
14 years 4 months ago
Psychological models of human and optimal performance in bandit problems
In bandit problems, a decision-maker must choose between a set of alternatives, each of which has a fixed but unknown rate of reward, to maximize their total number of rewards ov...
Michael D. Lee, Shunan Zhang, Miles Munro, Mark St...
BMCBI
2006
122views more  BMCBI 2006»
14 years 9 months ago
PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data
Background: We recently developed the Paired End diTag (PET) strategy for efficient characterization of mammalian transcriptomes and genomes. The paired end nature of short PET se...
Kuo Ping Chiu, Chee-Hong Wong, Qiongyu Chen, Prami...
BMCBI
2008
126views more  BMCBI 2008»
14 years 10 months ago
c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
Katerina Kechris, Hao Li
ICCV
2005
IEEE
15 years 3 months ago
Bi-Directional Tracking Using Trajectory Segment Analysis
In this paper, we present a novel approach to keyframe-based tracking, called bi-directional tracking. Given two object templates in the beginning and ending keyframes, the bi-dire...
Jian Sun, Weiwei Zhang, Xiaoou Tang, Heung-Yeung S...