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» Inference of Isoforms from Short Sequence Reads
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BIBM
2010
IEEE
144views Bioinformatics» more  BIBM 2010»
14 years 7 months ago
Identification and quantification of abundant species from pyrosequences of 16S rRNA by consensus alignment
16S rRNA gene profiling has recently been boosted by the development of pyrosequencing methods. A common analysis is to group pyrosequences into Operational Taxonomic Units (OTUs),...
Yuzhen Ye
BMCBI
2010
148views more  BMCBI 2010»
14 years 10 months ago
Calling SNPs without a reference sequence
Background: The most common application for the next-generation sequencing technologies is resequencing, where short reads from the genome of an individual are aligned to a refere...
Aakrosh Ratan, Yu Zhang, Vanessa M. Hayes, Stephan...
NAR
2007
152views more  NAR 2007»
14 years 9 months ago
COMPASS server for remote homology inference
COMPASS is a method for homology detection and local alignment construction based on the comparison of multiple sequence alignments (MSAs). The method derives numerical profiles f...
Ruslan Sadreyev, Ming Tang, Bong-Hyun Kim, Nick V....
WABI
2007
Springer
110views Bioinformatics» more  WABI 2007»
15 years 3 months ago
Haplotype Inference Via Hierarchical Genotype Parsing
The within-species genetic variation due to recombinations leads to a mosaic-like structure of DNA. This structure can be modeled, e.g. by parsing sample sequences of current DNA w...
Pasi Rastas, Esko Ukkonen
CVPR
2011
IEEE
14 years 6 months ago
A generative model for 3D urban scene understanding from movable platforms
3D scene understanding is key for the success of applications such as autonomous driving and robot navigation. However, existing approaches either produce a mild level of understa...
Andreas Geiger, Martin Lauer, Raquel Urtasun