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    BMCBI
    2007
    130views more  BMCBI 2007»
    A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression da
    14 years 9 months ago
    A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression da
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    Background: Proteins are the primary regulatory agents of transcription even though mRNA expression data alone, from systems like DNA microarrays, are widely used. In addition, th...
    Reuben Thomas, Carlos J. Paredes, Sanjay Mehrotra,...
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    BMCBI
    2007
    148views more  BMCBI 2007»
    fREDUCE: Detection of degenerate regulatory elements using correlation with expression
    14 years 9 months ago
    fREDUCE: Detection of degenerate regulatory elements using correlation with expression
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    Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
    Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...
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    BIOSYSTEMS
    2010
    81views more  BIOSYSTEMS 2010»
    Stochastic models for inferring genetic regulation from microarray gene expression data
    14 years 9 months ago
    Stochastic models for inferring genetic regulation from microarray gene expression data
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    Tianhai Tian
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    BMCBI
    2011
    254views Artificial Intelligence» more  BMCBI 2011»
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
    14 years 1 months ago
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
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    Background: Gene regulatory networks play essential roles in living organisms to control growth, keep internal metabolism running and respond to external environmental changes. Un...
    Yao Fu, Laura R. Jarboe, Julie A. Dickerson
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    BMCBI
    2008
    259views more  BMCBI 2008»
    DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcripti
    14 years 9 months ago
    DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcripti
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    Background: A typical step in the analysis of gene expression data is the determination of clusters of genes that exhibit similar expression patterns. Researchers are confronted w...
    Evert-Jan Blom, Sacha A. F. T. van Hijum, Klaas J....
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