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» Inferring Genetic Networks from Microarray Data
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NAR
2002
141views more  NAR 2002»
14 years 11 months ago
Co-expression pattern from DNA microarray experiments as a tool for operon prediction
The prediction of operons, the smallest unit of transcription in prokaryotes, is the first step towards reconstruction of a regulatory network at the whole genome level. Sequence ...
Chiara Sabatti, Lars Rohlin, Min-Kyu Oh, James C. ...
DAM
2007
91views more  DAM 2007»
14 years 11 months ago
Integer linear programming approaches for non-unique probe selection
In addition to their prevalent use for analyzing gene expression, DNA microarrays are an efficient tool for biological, medical, and industrial applications because of their abil...
Gunnar W. Klau, Sven Rahmann, Alexander Schliep, M...
IWANN
2009
Springer
15 years 6 months ago
Bayesian Joint Estimation of CN and LOH Aberrations
SNP-microarrays are able to measure simultaneously both copy number and genotype at several single nucleotide polymorphism positions. Combining the two data, it is possible to bett...
Paola M. V. Rancoita, Marcus Hutter, Francesco Ber...
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BMCBI
2010
153views more  BMCBI 2010»
14 years 12 months ago
Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
Background: Chromatin immunoprecipitation combined with DNA microarrays (ChIP-chip) is an assay used for investigating DNA-protein-binding or post-translational chromatin/histone ...
Benedikt Zacher, Pei Fen Kuan, Achim Tresch
BMCBI
2005
77views more  BMCBI 2005»
14 years 11 months ago
Combining Affymetrix microarray results
Background: As the use of microarray technology becomes more prevalent it is not unusual to find several laboratories employing the same microarray technology to identify genes re...
John R. Stevens, R. W. Doerge