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» Inferring Genetic Networks from Microarray Data
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BMCBI
2004
135views more  BMCBI 2004»
15 years 1 months ago
Determination of the differentially expressed genes in microarray experiments using local FDR
Background: Thousands of genes in a genomewide data set are tested against some null hypothesis, for detecting differentially expressed genes in microarray experiments. The expect...
Julie Aubert, Avner Bar-Hen, Jean-Jacques Daudin, ...
WABI
2009
Springer
155views Bioinformatics» more  WABI 2009»
15 years 8 months ago
A Markov Classification Model for Metabolic Pathways
Background: This paper considers the problem of identifying pathways through metabolic networks that relate to a specific biological response. Our proposed model, HME3M, first ide...
Timothy Hancock, Hiroshi Mamitsuka
115
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OSDI
2008
ACM
16 years 1 months ago
Probabilistic Inference in Queueing Networks
Although queueing models have long been used to model the performance of computer systems, they are out of favor with practitioners, because they have a reputation for requiring u...
Charles A. Sutton, Michael I. Jordan
RECOMB
2006
Springer
16 years 1 months ago
Identification and Evaluation of Functional Modules in Gene Co-expression Networks
Abstract. Identifying gene functional modules is an important step towards elucidating gene functions at a global scale. In this paper, we introduce a simple method to construct ge...
Jianhua Ruan, Weixiong Zhang
BMCBI
2005
114views more  BMCBI 2005»
15 years 1 months ago
Signal transduction pathway profiling of individual tumor samples
Background: Signal transduction pathways convey information from the outside of the cell to transcription factors, which in turn regulate gene expression. Our objective is to anal...
Thomas Breslin, Morten Krogh, Carsten Peterson, Ca...