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» Inferring biological networks with output kernel trees
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GPB
2010
231views Solid Modeling» more  GPB 2010»
14 years 6 months ago
Mining Gene Expression Profiles: An Integrated Implementation of Kernel Principal Component Analysis and Singular Value Decompos
The detection of genes that show similar profiles under different experimental conditions is often an initial step in inferring the biological significance of such genes. Visualiz...
Ferran Reverter, Esteban Vegas, Pedro Sánch...
RECOMB
2006
Springer
15 years 9 months ago
Probabilistic Paths for Protein Complex Inference
Understanding how individual proteins are organized into complexes and pathways is a significant current challenge. We introduce new algorithms to infer protein complexes by combin...
Hailiang Huang, Lan V. Zhang, Frederick P. Roth, J...
IPPS
2009
IEEE
15 years 4 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
ALT
2004
Springer
15 years 6 months ago
Relative Loss Bounds and Polynomial-Time Predictions for the k-lms-net Algorithm
We consider a two-layer network algorithm. The first layer consists of an uncountable number of linear units. Each linear unit is an LMS algorithm whose inputs are first “kerne...
Mark Herbster
KDD
2009
ACM
179views Data Mining» more  KDD 2009»
15 years 4 months ago
Identifying graphs from noisy and incomplete data
There is a growing wealth of data describing networks of various types, including social networks, physical networks such as transportation or communication networks, and biologic...
Galileo Mark S. Namata Jr., Lise Getoor