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BMCBI
2004
174views more  BMCBI 2004»
14 years 10 months ago
SeeGH - A software tool for visualization of whole genome array comparative genomic hybridization data
Background: Array comparative genomic hybridization (CGH) is a technique which detects copy number differences in DNA segments. Complete sequencing of the human genome and the dev...
Bryan Chi, Ronald J. deLeeuw, Bradley P. Coe, Calu...
BMCBI
2004
105views more  BMCBI 2004»
14 years 10 months ago
eL-DASionator: an LDAS upload file generator
Background: The Distributed Annotation System (DAS) allows merging of DNA sequence annotations from multiple sources and provides a single annotation view. A straightforward way t...
Vincent Nègre, Christoph Grunau
88
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PRIB
2010
Springer
123views Bioinformatics» more  PRIB 2010»
14 years 8 months ago
Machine Learning Study of DNA Binding by Transcription Factors from the LacI Family
We studied 1372 LacI-family transcription factors and their 4484 DNA binding sites using machine learning algorithms and feature selection techniques. The Naive Bayes classifier a...
Gennady G. Fedonin, Mikhail S. Gelfand
RECOMB
2010
Springer
15 years 5 months ago
Genomic DNA k-mer Spectra: Models and Modalities
Background: The empirical frequencies of DNA k-mers in whole genome sequences provide an interesting perspective on genomic complexity, and the availability of large segments of g...
Benny Chor, David Horn, Nick Goldman, Yaron Levy, ...
ESANN
2008
14 years 11 months ago
Discrimination of regulatory DNA by SVM on the basis of over- and under-represented motifs
In this paper we apply three pattern recognition methods (support vector machine, cluster analysis and principal component analysis) to distinguish regulatory regions from coding a...
Rene te Boekhorst, Irina I. Abnizova, Lorenz Werni...