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» Information Analysis of DNA Sequences
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ECAL
2005
Springer
15 years 7 months ago
Self-replication and Evolution of DNA Crystals
Abstract. Is it possible to create a simple physical system that is capable of replicating itself? Can such a system evolve interesting behaviors, thus allowing it to adapt to a wi...
Rebecca Schulman, Erik Winfree
BMCBI
2005
190views more  BMCBI 2005»
15 years 1 months ago
Species-specific analysis of protein sequence motifs using mutual information
Background: Protein sequence motifs are by definition short fragments of conserved amino acids, often associated with a specific function. Accordingly protein sequence profiles de...
Jan Hummel, Nima Keshvari, Wolfram Weckwerth, Joac...
NAR
2011
215views Computer Vision» more  NAR 2011»
14 years 4 months ago
dbCRID: a database of chromosomal rearrangements in human diseases
Chromosomal rearrangement (CR) events result from abnormal breaking and rejoining of the DNA molecules, or from crossing-over between repetitive DNA sequences, and they are involv...
Fanlou Kong, Jing Zhu, Jun Wu, Jianjian Peng, Ying...
108
Voted
ICML
2004
IEEE
16 years 2 months ago
Training conditional random fields via gradient tree boosting
Conditional Random Fields (CRFs; Lafferty, McCallum, & Pereira, 2001) provide a flexible and powerful model for learning to assign labels to elements of sequences in such appl...
Thomas G. Dietterich, Adam Ashenfelter, Yaroslav B...
133
Voted
BMCBI
2007
159views more  BMCBI 2007»
15 years 2 months ago
sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database
Background: RNA interference has revolutionized our ability to study the effects of altering the expression of single genes in mammalian (and other) cells through targeted knockdo...
Jyoti K. Shah, Harold R. Garner, Michael A. White,...