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» Information Analysis of DNA Sequences
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BMCBI
2008
116views more  BMCBI 2008»
15 years 2 months ago
GBParsy: A GenBank flatfile parser library with high speed
Background: GenBank flatfile (GBF) format is one of the most popular sequence file formats because of its detailed sequence features and ease of readability. To use the data in th...
Tae-Ho Lee, Yeon-Ki Kim, Baek Hie Nahm
BMCBI
2008
149views more  BMCBI 2008»
15 years 2 months ago
Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment s
Background: Confidence in pairwise alignments of biological sequences, obtained by various methods such as Blast or Smith-Waterman, is critical for automatic analyses of genomic d...
Olivier Bastien, Eric Maréchal
BMCBI
2007
110views more  BMCBI 2007»
15 years 1 months ago
Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy
Background: The design of long oligonucleotides for spotted DNA microarrays requires detailed attention to ensure their optimal performance in the hybridization process. The main ...
Guangan Hu, Manuel Llinás, Jingguang Li, Pe...
BMCBI
2008
149views more  BMCBI 2008»
15 years 15 days ago
MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data
Background: Recent advances in global genomic profiling methodologies have enabled multidimensional characterization of biological systems. Complete analysis of these genomic prof...
Bryan Chi, Ronald J. deLeeuw, Bradley P. Coe, Raym...
NAR
2010
116views more  NAR 2010»
14 years 8 months ago
The European Bioinformatics Institute's data resources
As the amount of biological data grows, so does the need for biologists to store and access this information in central repositories in a free and unambiguous manner. The European...
Catherine Brooksbank, Graham Cameron, Janet M. Tho...