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» Information Analysis of DNA Sequences
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RECOMB
2003
Springer
16 years 2 months ago
Whole-genome comparative annotation and regulatory motif discovery in multiple yeast species
In [13] we reported the genome sequences of S. paradoxus, S. mikatae and S. bayanus and compared these three yeast species to their close relative, S. cerevisiae. Genome-wide comp...
Manolis Kamvysselis, Nick Patterson, Bruce Birren,...
BMCBI
2005
90views more  BMCBI 2005»
15 years 1 months ago
An algorithm for the determination and quantification of components of nucleic acid mixtures based on single sequencing reaction
Background: Determination and quantification of nucleic acid components in a mixture is usually accomplished by microarray approaches, where the mixtures are hybridized against sp...
Alexander E. Pozhitkov, Kathryn Stemshorn, Diethar...
BMCBI
2006
145views more  BMCBI 2006»
15 years 2 months ago
Querying the public databases for sequences using complex keywords contained in the feature lines
Background: High throughput technologies often require the retrieval of large data sets of sequences. Retrieval of EMBL or GenBank entries using keywords is easy using tools such ...
Olivier Croce, Michaël Lamarre, Richard Chris...
CPM
1993
Springer
154views Combinatorics» more  CPM 1993»
15 years 6 months ago
On Suboptimal Alignments of Biological Sequences
It is widely accepted that the optimal alignment between a pair of proteins or nucleic acid sequences that minimizes the edit distance may not necessarily re ect the correct biolog...
Dalit Naor, Douglas L. Brutlag
CIKM
2009
Springer
15 years 8 months ago
An analysis framework for search sequences
In this paper we present a general framework to study sequences of search activities performed by a user. Our framework provides (i) a vocabulary to discuss types of features, mod...
Qiaozhu Mei, Kristina Klinkner, Ravi Kumar, Andrew...