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BMCBI
2007
143views more  BMCBI 2007»
13 years 6 months ago
Factor analysis for gene regulatory networks and transcription factor activity profiles
Background: Most existing algorithms for the inference of the structure of gene regulatory networks from gene expression data assume that the activity levels of transcription fact...
Iosifina Pournara, Lorenz Wernisch
BMCBI
2011
12 years 10 months ago
Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
Background: Gene regulatory networks play essential roles in living organisms to control growth, keep internal metabolism running and respond to external environmental changes. Un...
Yao Fu, Laura R. Jarboe, Julie A. Dickerson
KDD
2008
ACM
259views Data Mining» more  KDD 2008»
14 years 6 months ago
Using ghost edges for classification in sparsely labeled networks
We address the problem of classification in partially labeled networks (a.k.a. within-network classification) where observed class labels are sparse. Techniques for statistical re...
Brian Gallagher, Hanghang Tong, Tina Eliassi-Rad, ...
CP
2008
Springer
13 years 8 months ago
Flow-Based Propagators for the SEQUENCE and Related Global Constraints
We propose new filtering algorithms for the SEQUENCE constraint and some extensions of the SEQUENCE constraint based on network flows. We enforce domain consistency on the SEQUENCE...
Michael J. Maher, Nina Narodytska, Claude-Guy Quim...
MICCAI
2009
Springer
14 years 7 months ago
A Fast Alternative to Computational Fluid Dynamics for High Quality Imaging of Blood Flow
Obtaining detailed, patient-specific blood flow information would be very useful in detecting and monitoring cardio-vascular diseases. Current approaches rely on computational flui...
Robert H. P. McGregor, Dominik Szczerba, Krishnamu...