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BMCBI
2010
152views more  BMCBI 2010»
15 years 1 months ago
A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry
Background: High-resolution tandem mass spectra can now be readily acquired with hybrid instruments, such as LTQ-Orbitrap and LTQ-FT, in high-throughput shotgun proteomics workflo...
Chongle Pan, Byung-Hoon Park, William H. McDonald,...
IJCAI
2007
15 years 2 months ago
All Common Subsequences
Time series data abounds in real world problems. Measuring the similarity of time series is a key to solving these problems. One state of the art measure is the longest common sub...
Hui Wang
BMCBI
2008
149views more  BMCBI 2008»
15 years 1 months ago
Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment s
Background: Confidence in pairwise alignments of biological sequences, obtained by various methods such as Blast or Smith-Waterman, is critical for automatic analyses of genomic d...
Olivier Bastien, Eric Maréchal
BMCBI
2006
120views more  BMCBI 2006»
15 years 1 months ago
An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse
Background: Many statistical algorithms combine microarray expression data and genome sequence data to identify transcription factor binding motifs in the low eukaryotic genomes. ...
Ryung S. Kim, Hongkai Ji, Wing Hung Wong
CIKM
2009
Springer
15 years 7 months ago
An analysis framework for search sequences
In this paper we present a general framework to study sequences of search activities performed by a user. Our framework provides (i) a vocabulary to discuss types of features, mod...
Qiaozhu Mei, Kristina Klinkner, Ravi Kumar, Andrew...